If you have converted to the DX Sync Version (required for two-way replication), then you really should have a separate license for EACH server you are installing to, licensed for the maximum PSQL user count on each specific server. (Thus, if the secondary server is a 6U license, you only need a 6U DX.)
As for troubleshooting the replication environment, you need to be aware that this is a VERY complicated animal, made even more so through the use of two-way replication. Of course, 93MB is still a tiny file, in Pervasive terms. I know of sites successfully using DX with GB+ files. You probably need to start digging through the log files (DRE.LOG, MER.LOG) to see if change capture is enabled on all files, or if problems have been surfacing. Alternatively, you can try a "Full Push" replication manually, and see if that sends the other data.
If this is your first deployment, I might suggest deactivating everything, and re-deploying with only 4-5 tables, then digging into the data and see exactly how it is all working. Spending some time with the product manuals is a REAL good idea. However, two-way replication can still cause problems -- even our own DX training course never delved into the abyss of two-way sync -- way too many options, and too many things that could go wrong.